URAP

Patina Mendez - Lecturer, Environmental Science, Policy and Management

Status: Current Term Now Closed     Weekly Hours: 3-5 hrs     Location: On Campus

Streams in California have a variety of forms including: (a) intermittent streams that only flow for part of the year, and often are dry throughout the summer, (b) protected streams in national, state, regional, and county parts, and (c) urban streams that serve recreational needs and stormwater management. The project...

Patina Mendez - Lecturer, Environmental Science, Policy and Management

Status: Current Term Now Closed     Weekly Hours: 3-5 hrs     Location: On Campus

Studies in ecology and evolution rely on properly curated museum material and access to museum records and specimen. Caddisflies, in the insect order Trichoptera, are aquatic insects closely related to moths and butterflies. In this project, the student will assist with labeling, organizing, and curating caddisflies. The student will also...

Craig Miller - Professor, Molecular and Cell Biology

Status: Current Term Now Closed     Weekly Hours: 12 or more hours     Location: On Campus

A fantastic diversity in organismal form is seen in nature, yet we know little about the genetic basis of evolutionary change. We are using the head skeleton of the threespine stickleback (Gasterosteus aculeatus) as a model system to study the genetic basis of development and evolution. Sticklebacks have undergone one...

David Moore - Professor, Nutritional Sciences and Toxicology

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: On Campus

The Liver Receptor Homolog-1 (LRH-1) is an orphaned nuclear receptor (a family of protein transcription factors that regulate gene expression in the cell). Nuclear receptors contain a physical pocket known as the ligand binding domain (LBD) that is capable of binding and sensing various compounds. LRH-1&#039...

David Moore - Professor, Nutritional Sciences and Toxicology

Status: Check back for status     Weekly Hours: to be negotiated     Location: On Campus

Peroxisome proliferator-activated receptors (PPARs) form a subset of nuclear receptors, currently comprising three distinct members: PPARα, PPARγ, and PPARδ. Each receptor seems to influence pathways situated at the crossroads of intermediary metabolism and inflammation, imparting significant physiological and clinical relevance to them (Bensinger and Tontonoz, 2008). PPARα, a well...

David Moore - Professor, Nutritional Sciences and Toxicology

Status: Check back for status     Weekly Hours: to be negotiated     Location: On Campus

Inflammatory bowel disease (IBD) is an autoimmune inflammatory condition of the gastrointestinal tract. Statistics show that the incidence of IBD in the US is around 1.3% in the adult population. The pathophysiology of IBD is multifaceted and complex, with current therapeutics requiring optimization. Genome Wide Association Studies (GWAS) and experimental...

David Moore - Professor, Nutritional Sciences and Toxicology

Status: Check back for status     Weekly Hours: to be negotiated     Location: On Campus

Bile acids (BA), the amphipathic and water-soluble end-products of cholesterol metabolism, are essential for the emulsification and subsequent absorption of dietary lipids and fat-soluble vitamins. BA are synthesized by the liver, stored in the gallbladder, and secreted into the lumen of the small intestine to solubilize lipids...

Priya Moorjani - Professor, Center for Computational Biology, Molecular and Cell Biology

Status: Check back for status     Weekly Hours: 12 or more hours     Location: On Campus

Our lab studies human evolutionary genetics using genomic data from present-day and ancient DNA samples. We aim to understand how different populations relate to each other and what are some of the genes related to human adaptation and diseases. To this end, we develop computational and statistical methods and...

Priya Moorjani - Professor, Center for Computational Biology, Molecular and Cell Biology

Status: Check back for status     Weekly Hours: 12 or more hours     Location: On Campus

Unraveling the first migrations of humans out of Africa has invoked great interest among researchers from a wide range of disciplines. With the advent of genome-wide DNA sequencing techniques and an increase in the availability of ancient samples, genetics offers important tools for testing different hypothesis related to human...

Julian Motzkin - Professor, UC San Francisco

Status: Current Term Now Closed     Weekly Hours: to be negotiated     Location: Off Campus

When pain becomes chronic, there can be changes in brain areas involved with processing pain signals. Our research combines fMRI of pain circuits with repetitive transcranial magnetic stimulation (rTMS), a type of non-invasive brain stimulation, to determine how rTMS may alleviate difficult-to-treat pain...

Praveen Mummaneni - Professor, Neurosurgery-Spine

Status: Full- no new appr needed     Weekly Hours: 9-11 hrs     Location: Off Campus

UCSF is a leading center for the American Spine Registry, a nationwide initiative focused on collecting patient data to enhance care for individuals undergoing cervical and lumbar surgeries. Our research team investigates the outcomes of minimally invasive surgeries, factors influencing cancer recurrence and complications in spinal tumors, and the effectiveness...

Michael Nachman - Professor, Museum of Vertebrate Zoology, Integrative Biology

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: On Campus

Within ~500 years, house mice (Mus musculus domesticus) have expanded into a wide variety of habitats across North and South America. House mice can be found from the tropics to the arctic, and populations inhabiting these different environments have adapted to different thermal regimes. This project will focus on the...

Michael Nachman - Professor, Museum of Vertebrate Zoology, Integrative Biology

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: On Campus

Within ~500 years, house mice (Mus musculus domesticus) have expanded into a wide variety of habitats across North and South America. House mice can be found from the tropics to the arctic, and populations inhabiting these different environments have adapted to different thermal regimes. Mice from cold regions are larger...

Kara Nelson - Professor, Civil and Environmental Engineering

Status: Full- no new appr needed     Weekly Hours: 9-11 hrs     Location: On Campus

Direct potable reuse is a form of wastewater reuse where advanced-treated wastewater is introduced directly to the drinking water distribution system. Bench-scale reactors will be used to simulate drinking water distribution system pipes before and during the transition to direct potable reuse conditions. Microbial water quality parameters will...

Kara Nelson - Professor, Civil and Environmental Engineering

Status: Full- no new appr needed     Weekly Hours: 9-11 hrs     Location: On Campus

Recovering nutrients from wastewater can solve two problems: reducing eutrophication by eliminating nutrient discharges to the environment, and producing a local fertilizer that has lower embedded energy than industrial fertilizer. Our research aims to produce fertilizer by concentrating ammonium from wastewater and urine using struvite precipitation (for phosphorus) and ion...

Kara Nelson - Professor, Civil and Environmental Engineering

Status: Check back for status     Weekly Hours: 6-8 hrs     Location: On Campus

Despite being less than 1% of the total volume of liquid treated in wastewater treatment plants, urine is responsible for over 80% of the nitrogen in a treatment plants' influent stream. Commonly, this influx of nitrogen is only partially treated, leading to the release of excess nitrogen into the environment...

Rasmus Nielsen - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: 9-11 hrs     Location: On Campus

Understanding how species interact with their environment and how climate influences where species occur is integral to ecology. We work on questions about what factors influence the spatial distribution of species, which can be determined using mathematical models called 'species distribution models' or 'environmental niche models'. The data that go...

Rasmus Nielsen - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: 9-11 hrs     

The Fluorescence In Situ Hybridization (FISH) technique is a molecular cytogenetic method used to detect and localize the presence or absence of specific DNA sequences on chromosomes. It is widely used for karyotyping to visualize and map chromosomal abnormalities such as translocations, deletions, duplications, and aneuploidies. In Nielsen lab, we've...

Eva Nogales - Professor, Molecular and Cell Biology

Status: Full- no new appr needed     Weekly Hours: 12 or more hours     Location: On Campus

Faithful development and maintenance of cell identity requires that the expression of specific genes is turned on and off in a highly regulated manner. This epigenetic regulation requires that chromatin-modifying complexes can be dynamically recruited across the genome and activated with high spatial and temporal control. Many of these...

Eva Nogales - Professor, Molecular and Cell Biology

Status: Current Term Now Closed     Weekly Hours: 12 or more hours     Location: On Campus

The large transcription coactivators TFIID and SAGA play important roles in the regulation of gene expression. Over a megadalton in size, each of these complexes contains a number of structural modules with distinct functionalities. Interestingly, they share one particular module that plays different roles and that contains a number of...

Eva Nogales - Professor, Molecular and Cell Biology

Status: Full- no new appr needed     Weekly Hours: 12 or more hours     Location: On Campus

DNA methylation at CpG sites plays an essential role in maintaining genome stability and regulating gene expression and it is strictly monitored and controlled by a series of molecular machines. Defects in DNA methylation are frequently found in severe diseases, such as cancer and Alzheimer's. DNMT1(DNA methyltransferase 1) with...

Eva Nogales - Professor, Molecular and Cell Biology

Status: Check back for status     Weekly Hours: 12 or more hours     Location: On Campus

Accurate segregation of chromosomes during cell division is essential for maintaining proper cellular function and organismal health. Errors in chromosome segregation can result in apoptosis or an abnormal chromosome number, leading to conditions such as Down syndrome and Turner syndrome, exposing detrimental recessive mutations, and being associated with cancer. The...

Peter Oboyski - Sr. Museum Scientist, Essig Museum of Entomology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

UCB campus: Bees are responsible for pollination of many food crops and native plants. Moth larvae (caterpillars) are important herbivores of native and domesticated plants. Both bees and moths, therefore, are important indicators of ecosystem health. We are currently working to take high resolution photographs of of the hundreds of...

Peter Oboyski - Sr. Museum Scientist, Essig Museum of Entomology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

The Essig Museum is part of a large-scale collecting effort on the island of Sulawesi in Indonesia. We anticipate collecting vast quantities of bizarre and fascinating arthropods, many of which will be new to science. The two main goals of the project are to document the biological diversity of...

Peter Oboyski - Sr. Museum Scientist, Essig Museum of Entomology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

The Essig Museum is actively collecting insect specimens across the state to document the diversity and conservation status of California's native and non-native species. Samples are captured using various complementary trapping techniques to maximize the number of species. Some of these specimens will be added to our DNA sequencing...

Peter Oboyski - Sr. Museum Scientist, Essig Museum of Entomology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

Natural History Museums are repositories for biodiversity research, documentation of the impacts of global change, and a resource for new and innovative science. Managing these collections requires expertise in many disparate disciplines such as library science, anatomy & morphology, taxonomy, and data management. The Essig Museum houses over 5 million specimens...

Yuko Oda - Research Staff, UC San Francisco

Status: Full- no new appr needed     Weekly Hours: 9-11 hrs     Location: Off Campus

The goal of our research is to identify a mechanism how somatic stem cells determine their cell fate through stage or cell specific transcriptional and epigenetic program. We hypothesized that the vitamin D receptor and its regulator of Mediator is critical for temporal or spatial specific transcription to control epithelial...

Daniel Okamoto - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: to be negotiated     Location: On Campus

Climate change is dramatically altering the oceans. These changes include increases in sea surface temperature, pH, dissolved oxygen, and primary productivity. We use experiments and field data to assess how these changes affect the physiology, growth, reproduction, and behavior of marine animals. We have numerous samples from past experiments and...

Daniel Okamoto - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: to be negotiated     Location: On Campus

Wild fish populations are often subject to high levels of mortality from industrialized human harvest. Harvest mortality, particularly under certain environmental contexts, may have indirect, unpredictable effects on populations' biology beyond simply the removal of individuals from a population. To study these effects, we are using an experimental model system...

Victor Ortega Jimenez - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

Marangoni effect is used by water striders (Veliidae) and rove beetles (Staphylinidae) to induce an ultrafast escape response against inter- or intra-specific predators. However, it is unclear if the surfactants secreted by these insects, that reduce surface tension of water, can also affect predator’s locomotion during the chasing...

Victor Ortega Jimenez - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

Phantom crane flies (Bittacomorpha clavipes) are one of the most mysterious fliers in the insect world because it has been suggested that they are able to use their legs and body to generate aerodynamic forces and still keep a tight aerial control. Our research can be applied to micro aerial...

Victor Ortega Jimenez - Professor, Integrative Biology

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

Helicopters seeds (Samaras) are remarkable for their aerodynamic capabilities with insects wings. We Investigate the aerodynamics and kinematics of samaras in a vertical wind tunnel. The goal of this project is to understand the unsteady mechanisms they have to fly on unsteady flow conditions...

Emily Ozer - Professor, Public Health

Status: Full- no new appr needed     Weekly Hours: 6-8 hrs     Location: On Campus

Youth should be meaningfully included and engaged in conversations about policies that directly affect them. Youth-Led Participatory Action Research (YPAR) is a social justice-focused approach for promoting social change and positive youth development in which youth conduct systematic research and actions to improve their schools and communities (Ozer...

Emily Ozer - Professor, Public Health

Status: Full- no new appr needed     Weekly Hours: 6-8 hrs     Location: Off Campus

This project is conducting systematic review of the literature to describe the state of the youth participatory action research (YPAR) literature and synthesizing findings of the youth outcomes reported in these studies. YPAR is an approach that engages young people as researchers to study and address social problems within their...

Emily Ozer - Professor, Public Health

Status: Current Term Now Closed     Weekly Hours: 9-11 hrs     Location: On Campus

The SFUSD-UC Berkeley RPP aims to: 1) Integrate youth voice and Youth-Led Participatory Action Research into school/district decision-making processes. YPAR is an innovative approach for promoting social change and positive youth development in which youth conduct systematic research and actions to improve their schools and communities...

Emily Ozer - Professor, Public Health

Status: Check back for status     

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Angie Perone - Professor , Social Welfare

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: Off Campus

This project will involve two different mini-projects: (1) HOMES Survey:(LGBTQ+/SGL) Housing, Health, and Services for Older Adults. HOMES is a community-based participatory research (CBPR) project with LGBTQ+ / same-gender-loving older adults. It uses survey data from LGBTQ+ older adults and information from community partners from...

Angie Perone - Professor , Social Welfare

Status: Current Term Now Closed     Weekly Hours: to be negotiated     Location: Off Campus

This community-engaged multi-faceted project applies an emerging theoretical and conceptual framework (equitable aging), which centers justice and power in understanding and examining aging programs, services, and policies. This project involves qualitative data collection (e.g., focus groups, interviews, ethnographic documents, virtual ethnography), qualitative data analysis, and dissemination. For one...

Angie Perone - Professor , Social Welfare

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: Off Campus

This project will provide opportunities for students with a strong foundation in quantitative research to help design a research project that collects survey data from CareYaya’s program participants. Students will also assist with survey data analysis and potentially dissemination. CareYaya is a technology-enabled caregiving platform that connects families who...

Amy Pickering - Professor, Civil and Environmental Engineering

Status: Current Term Now Closed     Weekly Hours: 3-5 hrs     Location: On Campus

The Pickering Lab at UC Berkeley is currently developing SOIL-SEQ, a hands-on education module for local high school classrooms designed to engage students in a crowdsourcing effort to provide data to better understand the spread of bacterial antibiotic resistance through the environment. We are using cutting-edge, portable...

Amy Pickering - Professor, Civil and Environmental Engineering

Status: Full- no new appr needed     Weekly Hours: 6-8 hrs     Location: On Campus

Soil-transmitted helminths (STH) cause a neglected tropical disease inextricably linked to poverty, inadequate sanitation, and unhygienic conditions. STH account for over five million disability-adjusted life years (DALYs) and infect around 1.5 billion people, representing the most prevalent parasitic infections worldwide. Classical microscopy-based surveillance strategies are suboptimal and...

Amy Pickering - Professor, Civil and Environmental Engineering

Status: Current Term Now Closed     Weekly Hours: 3-5 hrs     Location: On Campus

The Pickering Lab is looking for a URAP student interested in working on an in-line chlorination project in Honduras. The project evaluates the Cova Circuit Rider model as an effective model for scaling up access to inline chlorinated water in Central America. We will evaluate this model through an...

Amy Pickering - Professor, Civil and Environmental Engineering

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

Contaminated water supplies in health facilities place patients at risk for antibiotic resistant infections, leading to poor health outcomes. Globally, more than 20% of health facilities lack even basic water services. To provide low-cost water treatment, the Pickering Lab has been developing a passive in-line chlorination technology, known...

Pedro Pinheiro-Chagas - Professor, UC San Francisco

Status: Check back for status     Weekly Hours: to be negotiated     Location: Off Campus

The UCSF Memory and Aging Center (MAC) Co-pilot project is an innovative research initiative aimed at revolutionizing the diagnosis of neurodegenerative diseases (NDD), such as Alzheimer's disease and Frontotemporal dementia, through the integration of advanced Large Language Models (LLMs). This project is particularly significant due to the high prevalence...

Pedro Pinheiro-Chagas - Professor, UC San Francisco

Status: Full- no new appr needed     Weekly Hours: to be negotiated     

Alzheimer’s disease and related dementias are neurodegenerative diseases with numbers rapidly increasing and currently no cure. To accurately identify the earliest signs of clinical dementia, there is a critical need for sensitive, low-cost, and high-access cognitive markers in the preclinical phase. Novel cognitive markers can complement biomarker information...

Pedro Pinheiro-Chagas - Professor, UC San Francisco

Status: Full- no new appr needed     Weekly Hours: to be negotiated     

Semantic dementia (SD) presents as a unique neurodegenerative disorder with focal atrophy of the anterior temporal lobes (ATLs). It is comprised of a primarily left-lateralized language syndrome and a right-lateralized behavioral disorder. One current challenge in this disease is in accurately identifying the distant brain regions that are...

Alison Post - Professor, Political Science

Status: Full- no new appr needed     Weekly Hours: 6-8 hrs     Location: On Campus

When do voters elect medical doctors for office? Scholars focused on symbolic and substantive representation typically concentrate on race, gender, religion, or some combination thereof. However, historically, political science scholars have been interested in occupation as a salient category, particularly lawyers. With the decline of the politician-lawyer in Congress...

Alison Post - Professor, Political Science

Status: Current Term Now Closed     Weekly Hours: 6-8 hrs     Location: On Campus

What are the main types of concerns that citizens bring to mayors and city councilors in Latin America? What sorts of incentives do public officials have to address these concerns? And how do these dynamics vary between cities of different sizes? In this project, we will investigate local-level politics...

Matthew Potts - Professor, Environmental Science, Policy and Management

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: On Campus

Project Overview: California faces dual challenges of ambitious climate commitments and a severe affordable housing crisis. This project aims to address these challenges by developing and scaling the use of Engineered Living Materials (ELM)—advanced biomaterials that integrate living cells with synthetic scaffolds. These materials can sense, respond to, and...

Matthew Potts - Professor, Environmental Science, Policy and Management

Status: Full- no new appr needed     Weekly Hours: to be negotiated     Location: On Campus

Overview: Public debates and policies are increasingly shifting to include nature and nature-related risks and mitigations in climate discourse. Chief among nature-related risks are issues centered on biodiversity. These frameshifts are evidenced by multilateral agreements such as the Global Biodiversity Framework and a suite of regulations coming out...