Monk seal conservation genomics
Stephen Gaughran, Professor
Integrative Biology
Closed. This professor is continuing with Fall 2025 apprentices on this project; no new apprentices needed for Spring 2026.
Monk seals are the world’s only tropical seals, with two distinct species living in Hawaii and the Mediterranean Sea. Despite intensive conservation efforts, only about 1,000 individuals survive in each species. My lab is using whole genome sequencing data from hundreds of individuals and population genetic analyses to study the genetic variation, population genetic structuring, mating systems, migration patterns, and inbreeding depression of each species. This research will be used both directly and indirectly to make management decisions for these species with the ultimate goal of helping the populations fully recover.
Role: In this project, students will analyze monk seal population genomic data to answer important evolutionary and conservation-related questions. Students will work together to analyze the large data set, with each student taking responsibility for a set of questions and analyses. Students will choose an evolutionary or conservation genetic question that interests them (e.g., population structure, demographic history, pedigree analysis, genetic health, population viability) and spend the semester analyzing data to answer that question. Students will be trained in analyzing population genomic data, but much of the work will be self-guided or involve peer-mentorship. Students will meet regularly with the PI to discuss progress, get help with computational troubleshooting, and share ideas for next steps.
Qualifications: Experience working with genetic data is not required, but competitive applicants will have some experience using the command line and in basic coding (python/R/Java/C++/etc.). Prior coursework that covered population genetics would be helpful, but is not necessary for motivated students who are interested in reading background literature on the subject.
Hours: 6-8 hrs
Biological & Health Sciences